A redox-mediated Kemp eliminase

  • Aitao Li
  • , Binju Wang
  • , Adriana Ilie
  • , Kshatresh D. Dubey
  • , Gert Bange
  • , Ivan V. Korendovych
  • , Sason Shaik
  • , Manfred T. Reetz*
  • *Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

47 Scopus citations

Abstract

The acid/base-catalysed Kemp elimination of 5-nitro-benzisoxazole forming 2-cyano-4-nitrophenol has long served as a design platform of enzymes with non-natural reactions, providing new mechanistic insights in protein science. Here we describe an alternative concept based on redox catalysis by P450-BM3, leading to the same Kemp product via a fundamentally different mechanism. QM/MM computations show that it involves coordination of the substrate's N-atom to haem-Fe(II) with electron transfer and concomitant N-O heterolysis liberating an intermediate having a nitrogen radical moiety Fe(III)-N· and a phenoxyl anion. Product formation occurs by bond rotation and H-transfer. Two rationally chosen point mutations cause a notable increase in activity. The results shed light on the prevailing mechanistic uncertainties in human P450-catalysed metabolism of the immunomodulatory drug leflunomide, which likewise undergoes redox-mediated Kemp elimination by P450-BM3. Other isoxazole-based pharmaceuticals are probably also metabolized by a redox mechanism. Our work provides a basis for designing future artificial enzymes.

Original languageEnglish
Article number14876
JournalNature Communications
Volume8
DOIs
StatePublished - 28 Mar 2017

Bibliographical note

Publisher Copyright:
© The Author(s) 2017.

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