TY - JOUR
T1 - An efficient analytical reduction of detailed nonlinear neuron models
AU - Amsalem, Oren
AU - Eyal, Guy
AU - Rogozinski, Noa
AU - Gevaert, Michael
AU - Kumbhar, Pramod
AU - Schürmann, Felix
AU - Segev, Idan
N1 - Publisher Copyright:
© 2020, The Author(s).
PY - 2020/12/1
Y1 - 2020/12/1
N2 - Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40–250 folds for a variety of cell types and realistic number (10,000–100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired “deep networks”. Neuron_Reduce is publicly available and is straightforward to implement.
AB - Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40–250 folds for a variety of cell types and realistic number (10,000–100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired “deep networks”. Neuron_Reduce is publicly available and is straightforward to implement.
UR - http://www.scopus.com/inward/record.url?scp=85077941791&partnerID=8YFLogxK
U2 - 10.1038/s41467-019-13932-6
DO - 10.1038/s41467-019-13932-6
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C2 - 31941884
AN - SCOPUS:85077941791
SN - 2041-1723
VL - 11
JO - Nature Communications
JF - Nature Communications
IS - 1
M1 - 288
ER -