TY - JOUR
T1 - Automatic sorting of point pattern sets using Minkowski functionals
AU - Parker, Joshua
AU - Sherman, Eilon
AU - Van De Raa, Matthias
AU - Van Der Meer, Devaraj
AU - Samelson, Lawrence E.
AU - Losert, Wolfgang
PY - 2013/8/29
Y1 - 2013/8/29
N2 - Point pattern sets arise in many different areas of physical, biological, and applied research, representing many random realizations of underlying pattern formation mechanisms. These pattern sets can be heterogeneous with respect to underlying spatial processes, which may not be visually distiguishable. This heterogeneity can be elucidated by looking at statistical measures of the patterns sets and using these measures to divide the pattern sets into distinct groups representing like spatial processes. We introduce here a numerical procedure for sorting point pattern sets into spatially homogenous groups using functional principal component analysis (FPCA) applied to the approximated Minkowski functionals of each pattern. We demonstrate that this procedure correctly sorts pattern sets into similar groups both when the patterns are drawn from similar processes and when the second-order characteristics of the pattern are identical. We highlight this routine for distinguishing the molecular patterning of fluorescently labeled cell membrane proteins, a subject of much interest in studies investigating complex spatial signaling patterns involved in the human immune response.
AB - Point pattern sets arise in many different areas of physical, biological, and applied research, representing many random realizations of underlying pattern formation mechanisms. These pattern sets can be heterogeneous with respect to underlying spatial processes, which may not be visually distiguishable. This heterogeneity can be elucidated by looking at statistical measures of the patterns sets and using these measures to divide the pattern sets into distinct groups representing like spatial processes. We introduce here a numerical procedure for sorting point pattern sets into spatially homogenous groups using functional principal component analysis (FPCA) applied to the approximated Minkowski functionals of each pattern. We demonstrate that this procedure correctly sorts pattern sets into similar groups both when the patterns are drawn from similar processes and when the second-order characteristics of the pattern are identical. We highlight this routine for distinguishing the molecular patterning of fluorescently labeled cell membrane proteins, a subject of much interest in studies investigating complex spatial signaling patterns involved in the human immune response.
UR - http://www.scopus.com/inward/record.url?scp=84884228525&partnerID=8YFLogxK
U2 - 10.1103/PhysRevE.88.022720
DO - 10.1103/PhysRevE.88.022720
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C2 - 24032877
AN - SCOPUS:84884228525
SN - 1539-3755
VL - 88
JO - Physical Review E
JF - Physical Review E
IS - 2
M1 - 022720
ER -