TY - JOUR
T1 - Critical slowing down in biochemical networks with feedback
AU - Byrd, Tommy A.
AU - Erez, Amir
AU - Vogel, Robert M.
AU - Peterson, Curtis
AU - Vennettilli, Michael
AU - Altan-Bonnet, Grégoire
AU - Mugler, Andrew
N1 - Publisher Copyright:
© 2019 American Physical Society.
PY - 2019/8/26
Y1 - 2019/8/26
N2 - Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.
AB - Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.
UR - http://www.scopus.com/inward/record.url?scp=85072100643&partnerID=8YFLogxK
U2 - 10.1103/PhysRevE.100.022415
DO - 10.1103/PhysRevE.100.022415
M3 - ???researchoutput.researchoutputtypes.contributiontojournal.article???
C2 - 31574667
AN - SCOPUS:85072100643
SN - 2470-0045
VL - 100
JO - Physical Review E
JF - Physical Review E
IS - 2
M1 - 022415
ER -