Effects of post-transcriptional regulation on phenotypic noise in Escherichia coli

Rinat Arbel-Goren, Asaf Tal, Tamar Friedlander, Shiri Meshner, Nina Costantino, Donald L. Court, Joel Stavans*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

18 Scopus citations


Cell-to-cell variations in protein abundance, called noise, give rise to phenotypic variability between isogenic cells. Studies of noise have focused on stochasticity introduced at transcription, yet the effects of post-transcriptional regulatory processes on noise remain unknown. We study the effects of RyhB, a small-RNA of Escherichia coli produced on iron stress, on the phenotypic variability of two of its downregulated target proteins, using dual chromosomal fusions to fluorescent reporters and measurements in live individual cells. The total noise of each of the target proteins is remarkably constant over a wide range of RyhB production rates despite cells being in stress. In fact, coordinate downregulation of the two target proteins by RyhB reduces the correlation between their levels. Hence, an increase in phenotypic variability under stress is achieved by decoupling the expression of different target proteins in the same cell, rather than by an increase in the total noise of each. Extrinsic noise provides the dominant contribution to the total protein noise over the total range of RyhB production rates. Stochastic simulations reproduce qualitatively key features of our observations and show that a feed-forward loop formed by transcriptional extrinsic noise, an sRNA and its target genes exhibits strong noise filtration capabilities.

Original languageAmerican English
Pages (from-to)4825-4834
Number of pages10
JournalNucleic Acids Research
Issue number9
StatePublished - May 2013
Externally publishedYes

Bibliographical note

Funding Information:
Funding for open access charge: Israel Science Foundation (842/08 to J.S.); Clore fellowship (to T.F.); Intramural Research Program of the National Institutes of Health, National Cancer Institute, Center for Cancer Research (in part) and Trans National Institutes of Health/Food and Drug Administration Intramural Biodefense Program Grant of National Institutes of Allergy and Infectious Disease (in part) (to D.L.C.).


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