MESHI: A new library of Java classes for molecular modeling

Nir Kalisman, Ami Levi, Tetyana Maximova, Dan Reshef, Sharon Zafriri-Lynn, Yan Gleyzer, Chen Keasar*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

28 Scopus citations

Abstract

Summary: Adapting a modular and object-oriented approach in the design of molecular modeling packages may reduce the software development barrier between ideas and their programed applications. Towards this goal we developed MESHI, a new, strictly object-oriented, molecular modeling suite written in Java. MESHI provides a comprehensive library of extendable classes for all the essential components of molecular modeling: molecular and geometry elements, energy functions and optimization methods.

Original languageAmerican English
Pages (from-to)3931-3932
Number of pages2
JournalBioinformatics
Volume21
Issue number20
DOIs
StatePublished - Oct 2005
Externally publishedYes

Bibliographical note

Funding Information:
While most of the code is original, it was written under the inspiration of the packages written by Ron Elber, Michael Levitt, Jeffery Skolnick and Andrzej Kolinski that C.K. was advantageous to study, use and manipulate. Eitan Domany’s support was invaluable. C.K. is a Ralph Selig Career Development Chair in information theory, N.K. is supported by the Kreitman Foundation. The EU 6th Framework Program is gratefully acknowledged for support to the GeneFun project, contract No: LSHG-CT-2004-503567. S.Z.L. was supported by the Israeli Ministry of Science.

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