PDZBase: A protein-protein interaction database for PDZ-domains

Thijs Beuming; Lucy Skrabanek; Masha Y. Niv; Piali Mukherjee; Harel Weinstein

doi:10.1093/bioinformatics/bti098

PDZBase: A protein-protein interaction database for PDZ-domains

Thijs Beuming, Lucy Skrabanek, Masha Y. Niv, Piali Mukherjee, Harel Weinstein^*

^*Corresponding author for this work

Research output: Contribution to journal › Comment/debate

166 Scopus citations

Abstract

Summary: PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZ-Base contains approximately 300 such interactions, which have been manually extracted from >200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).

Original language	English
Pages (from-to)	827-828
Number of pages	2
Journal	Bioinformatics
Volume	21
Issue number	6
DOIs	https://doi.org/10.1093/bioinformatics/bti098
State	Published - 15 Mar 2005
Externally published	Yes

Bibliographical note

Funding Information:
We thank Dr Nathalie Basdevant for curating part of the interactions. The work is supported by NIH grants K05 DA00060, P01 DA124080 and P01 DA12923.

Access to Document

10.1093/bioinformatics/bti098

Cite this

@article{ead3f4944ccd407695e44ead7288dda7,

title = "PDZBase: A protein-protein interaction database for PDZ-domains",

abstract = "Summary: PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZ-Base contains approximately 300 such interactions, which have been manually extracted from >200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).",

author = "Thijs Beuming and Lucy Skrabanek and Niv, {Masha Y.} and Piali Mukherjee and Harel Weinstein",

note = "Funding Information: We thank Dr Nathalie Basdevant for curating part of the interactions. The work is supported by NIH grants K05 DA00060, P01 DA124080 and P01 DA12923.",

year = "2005",

month = mar,

day = "15",

doi = "10.1093/bioinformatics/bti098",

language = "אנגלית",

volume = "21",

pages = "827--828",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "6",

}

TY - JOUR

T1 - PDZBase

T2 - A protein-protein interaction database for PDZ-domains

AU - Beuming, Thijs

AU - Skrabanek, Lucy

AU - Niv, Masha Y.

AU - Mukherjee, Piali

AU - Weinstein, Harel

N1 - Funding Information: We thank Dr Nathalie Basdevant for curating part of the interactions. The work is supported by NIH grants K05 DA00060, P01 DA124080 and P01 DA12923.

PY - 2005/3/15

Y1 - 2005/3/15

N2 - Summary: PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZ-Base contains approximately 300 such interactions, which have been manually extracted from >200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).

AB - Summary: PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZ-Base contains approximately 300 such interactions, which have been manually extracted from >200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).

UR - http://www.scopus.com/inward/record.url?scp=15944375458&partnerID=8YFLogxK

U2 - 10.1093/bioinformatics/bti098

DO - 10.1093/bioinformatics/bti098

M3 - ???researchoutput.researchoutputtypes.contributiontojournal.comment???

C2 - 15513994

AN - SCOPUS:15944375458

SN - 1367-4803

VL - 21

SP - 827

EP - 828

JO - Bioinformatics

JF - Bioinformatics

IS - 6

ER -

PDZBase: A protein-protein interaction database for PDZ-domains

Abstract

Bibliographical note

Access to Document

Other files and links

Fingerprint

Cite this