Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S. da Costa; Alejandro P. Rooney; Hana Yi; Xue Wei Xu; Sofie De Meyer; Martha E. Trujillo

doi:10.1099/ijsem.0.002516

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun^*, Aharon Oren, Antonio Ventosa, Henrik Christensen, David Ruiz Arahal, Milton S. da Costa, Alejandro P. Rooney, Hana Yi, Xue Wei Xu, Sofie De Meyer, Martha E. Trujillo

^*Corresponding author for this work

Department of Plant and Environmental Sciences (Natural Sciences)

Research output: Contribution to journal › Article › peer-review

1878 Scopus citations

Abstract

Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

Original language	American English
Article number	002516
Pages (from-to)	461-466
Number of pages	6
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	68
Issue number	1
DOIs	https://doi.org/10.1099/ijsem.0.002516
State	Published - Jan 2018

Bibliographical note

Publisher Copyright:
© 2018 IUMS.

Keywords

Average nucleotide identity
Genome sequence
Minimal standards
Phylogenomics
Prokaryotic taxonomy

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10.1099/ijsem.0.002516

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Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D. R., da Costa, M. S., Rooney, A. P., Yi, H., Xu, X. W., De Meyer, S., & Trujillo, M. E. (2018). Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 68(1), 461-466. Article 002516. https://doi.org/10.1099/ijsem.0.002516

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AU - Rooney, Alejandro P.

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Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Abstract

Bibliographical note

Keywords

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