RNase P: Role of distinct protein cofactors in tRNA substrate recognition and RNA-based catalysis

Ela Sharin, Aleks Schein, Hagit Mann, Yitzhak Ben-Asouli, Nayef Jarrous*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

21 Scopus citations

Abstract

The Escherichia coli ribonuclease P (RNase P) has a protein component, termed C5, which acts as a cofactor for the catalytic M1 RNA subunit that processes the 5′ leader sequence of precursor tRNA. Rpp29, a conserved protein subunit of human RNase P, can substitute for C5 protein in reconstitution assays of M1 RNA activity. To better understand the role of the former protein, we compare the mode of action of Rpp29 to that of the C5 protein in activation of M1 RNA. Enzyme kinetic analyses reveal that complexes of M1 RNA-Rpp29 and M1 RNA-C5 exhibit comparable binding affinities to precursor tRNA but different catalytic efficiencies. High concentrations of substrate impede the activity of the former complex. Rpp29 itself exhibits high affinity in substrate binding, which seems to reduce the catalytic efficiency of the reconstituted ribonucleoprotein. Rpp29 has a conserved C-terminal domain with an Sm-like fold that mediates interaction with M1 RNA and precursor tRNA and can activate M1 RNA. The results suggest that distinct protein folds in two unrelated protein cofactors can facilitate transition from RNA- to ribonucleoprotein-based catalysis by RNase P.

Original languageAmerican English
Pages (from-to)5120-5132
Number of pages13
JournalNucleic Acids Research
Volume33
Issue number16
DOIs
StatePublished - 2005

Bibliographical note

Funding Information:
We thank Sidney Altman (Yale University) for providing us with recombinant C5 protein and anti-C5 protein antibodies. Y.B.A., a postdoctoral fellow, is supported in part by the anonymous fund with Dr Nemeth, Friends of the Hebrew University, UK. This research is supported by the United States-Israel Binational Science Foundation (grant no. 2001-017), the Israel Science Foundation (grant no. 549/01) and the Abisch-Frenkel Foundation (Switzerland) to N.J. Funding to pay the Open Access publication charges for this article was provided by United States-Israel Binational Science Foundation.

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