The genome of the stress-tolerant wild tomato species Solanum pennellii

Anthony Bolger; Federico Scossa; Marie E. Bolger; Christa Lanz; Florian Maumus; Takayuki Tohge; Hadi Quesneville; Saleh Alseekh; Iben Sørensen; Gabriel Lichtenstein; Eric A. Fich; Mariana Conte; Heike Keller; Korbinian Schneeberger; Rainer Schwacke; Itai Ofner; Julia Vrebalov; Yimin Xu; Sonia Osorio; Saulo Alves Aflitos; Elio Schijlen; José M. Jiménez-Goméz; Malgorzata Ryngajllo; Seisuke Kimura; Ravi Kumar; Daniel Koenig; Lauren R. Headland; Julin N. Maloof; Neelima Sinha; Roeland C.H.J. Van Ham; René Klein Lankhorst; Linyong Mao; Alexander Vogel; Borjana Arsova; Ralph Panstruga; Zhangjun Fei; Jocelyn K.C. Rose; Dani Zamir; Fernando Carrari; James J. Giovannoni; Detlef Weigel; Björn Usadel; Alisdair R. Fernie

doi:10.1038/ng.3046

The genome of the stress-tolerant wild tomato species Solanum pennellii

Anthony Bolger, Federico Scossa, Marie E. Bolger, Christa Lanz, Florian Maumus, Takayuki Tohge, Hadi Quesneville, Saleh Alseekh, Iben Sørensen, Gabriel Lichtenstein, Eric A. Fich, Mariana Conte, Heike Keller, Korbinian Schneeberger, Rainer Schwacke, Itai Ofner, Julia Vrebalov, Yimin Xu, Sonia Osorio, Saulo Alves AflitosElio Schijlen, José M. Jiménez-Goméz, Malgorzata Ryngajllo, Seisuke Kimura, Ravi Kumar, Daniel Koenig, Lauren R. Headland, Julin N. Maloof, Neelima Sinha, Roeland C.H.J. Van Ham, René Klein Lankhorst, Linyong Mao, Alexander Vogel, Borjana Arsova, Ralph Panstruga, Zhangjun Fei, Jocelyn K.C. Rose, Dani Zamir, Fernando Carrari, James J. Giovannoni, Detlef Weigel, Björn Usadel^*, Alisdair R. Fernie

^*Corresponding author for this work

Institute of Plant Sciences and Genetics in Agriculture

Research output: Contribution to journal › Article › peer-review

344 Scopus citations

Abstract

Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.

Original language	English
Pages (from-to)	1034-1038
Number of pages	5
Journal	Nature Genetics
Volume	46
Issue number	9
DOIs	https://doi.org/10.1038/ng.3046
State	Published - 2014

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© 2014 Nature America, Inc. All rights reserved.

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Bolger, A., Scossa, F., Bolger, M. E., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sørensen, I., Lichtenstein, G., Fich, E. A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., ... Fernie, A. R. (2014). The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics, 46(9), 1034-1038. https://doi.org/10.1038/ng.3046

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abstract = "Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.",

author = "Anthony Bolger and Federico Scossa and Bolger, {Marie E.} and Christa Lanz and Florian Maumus and Takayuki Tohge and Hadi Quesneville and Saleh Alseekh and Iben S{\o}rensen and Gabriel Lichtenstein and Fich, {Eric A.} and Mariana Conte and Heike Keller and Korbinian Schneeberger and Rainer Schwacke and Itai Ofner and Julia Vrebalov and Yimin Xu and Sonia Osorio and Aflitos, {Saulo Alves} and Elio Schijlen and Jim{\'e}nez-Gom{\'e}z, {Jos{\'e} M.} and Malgorzata Ryngajllo and Seisuke Kimura and Ravi Kumar and Daniel Koenig and Headland, {Lauren R.} and Maloof, {Julin N.} and Neelima Sinha and {Van Ham}, {Roeland C.H.J.} and Lankhorst, {Ren{\'e} Klein} and Linyong Mao and Alexander Vogel and Borjana Arsova and Ralph Panstruga and Zhangjun Fei and Rose, {Jocelyn K.C.} and Dani Zamir and Fernando Carrari and Giovannoni, {James J.} and Detlef Weigel and Bj{\"o}rn Usadel and Fernie, {Alisdair R.}",

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Bolger, A, Scossa, F, Bolger, ME, Lanz, C, Maumus, F, Tohge, T, Quesneville, H, Alseekh, S, Sørensen, I, Lichtenstein, G, Fich, EA, Conte, M, Keller, H, Schneeberger, K, Schwacke, R, Ofner, I, Vrebalov, J, Xu, Y, Osorio, S, Aflitos, SA, Schijlen, E, Jiménez-Goméz, JM, Ryngajllo, M, Kimura, S, Kumar, R, Koenig, D, Headland, LR, Maloof, JN, Sinha, N, Van Ham, RCHJ, Lankhorst, RK, Mao, L, Vogel, A, Arsova, B, Panstruga, R, Fei, Z, Rose, JKC, Zamir, D, Carrari, F, Giovannoni, JJ, Weigel, D, Usadel, B & Fernie, AR 2014, 'The genome of the stress-tolerant wild tomato species Solanum pennellii', Nature Genetics, vol. 46, no. 9, pp. 1034-1038. https://doi.org/10.1038/ng.3046

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The genome of the stress-tolerant wild tomato species Solanum pennellii

Abstract

Bibliographical note

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