Zinc fingers: Conserved properties that can distinguish between spurious and actual dna-binding motifs

Rakefet Rosenfeld, Hanah Margalit*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

27 Scopus citations

Abstract

The zinc finger, one of the major structural motifs used for sequence specific DNA binding, has been identified in many regulatory proteins. By analogy, involvement in nucleic acid recognition has been implied for proteins that contain two cysteines and two histidines, spaced in accordance with the zinc finger motif. In this study we identify sequence dependent characteristics that are conserved in the DNA-binding zinc fingers and are probably required for a functional DNA-binding zinc finger. Examination of the conserved properties in view of the solved three dimensional structure of a zinc finger, confirms the importance of most of these properties. The absence of the identified physical-chemical characteristics from CCHH containing sequences of non-DNA binding proteins suggest that they can be used to dis-tinguish between spurious and actual DNA binding zinc fingers.

Original languageAmerican English
Pages (from-to)557-570
Number of pages14
JournalJournal of Biomolecular Structure and Dynamics
Volume11
Issue number3
DOIs
StatePublished - Dec 1993

Bibliographical note

Funding Information:
We would like to thank Drs. N. Linial and M. Baras for helpful discussions. This work was supported by The Israeli Ministry of Science and Technology, through the Levy Eshkol Fund granted to R.R.

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